species:   Clros
pid:       PID1846
parent:    cro-mir-36
paralog:   
locus:     CADEHS020000106.2:298129-298217
matures:   ['UCAAACACAAUUAGCGGUC', 'CCGCUAAUUGUGUUUGAGA']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000106.2:298129-298217

342 out of bounds
526 alignments
157 proper strand
141 stranded perfect matches

********************                                              ********************** 
UCAAACACAAUUAGCGGUCUAUACCCAAACCUUCCACUCUGGAAAAUUUUUGGAAAAGUUGGGUAUAGACCGCUAAUUGUGUUUGAGAU
((((((((((((((((((((((((((((...(((((..............)))))...))))))))))))))))))))))))))))...
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=57 c
---------------------------------------------------------------------CCGCUAAUUGUGUUUGAGA- l=19 a=0 c*
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=66 ma
--------------------------------------------------------------------ACCGCUAAUUGUGUUUGAGA- l=20 a=0 ma*

UCAAACACAAUUAGCGGU----------------------------------------------------------------------- l=18 a=2 
UCAAACACAAUUAGCGGUC---------------------------------------------------------------------- l=19 a=57 (c)
UCAAACACAAUUAGCGaUC---------------------------------------------------------------------- l=19 a=1 
UCAAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=20 a=66 (ma)
UCAAACACAuUUAGCGGUCU--------------------------------------------------------------------- l=20 a=1 
UCAAACACAAUUAGCGGUCg--------------------------------------------------------------------- l=20 a=1 
UCAAACACAAUUAGCGGUCa--------------------------------------------------------------------- l=20 a=2 
UCAAACACAAUUAGCGGUCUA-------------------------------------------------------------------- l=21 a=9 
UCAAACACAAUUAGCGGUCaA-------------------------------------------------------------------- l=21 a=2 
UCAAACACAAUUAGCGGUCUAc------------------------------------------------------------------- l=22 a=5 
UCAAACACAAUUAGCGGUCUAa------------------------------------------------------------------- l=22 a=2 
--AAACACAAUUAGCGGUCU--------------------------------------------------------------------- l=18 a=1 
---------------------------------------------------------------UAUAGACCGCUAAUUGUG-------- l=18 a=1 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGA--- l=21 a=2 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAG-- l=22 a=2 
-----------------------------------------------------------------UAGACCGCUAAUUGUGUUUGAGAU l=24 a=1 
-------------------------------------------------------------------GACCGCUAAUUGUGUUUGAGc- l=21 a=1 
-----------------------------------------------------------------------GCUAAUUGUGUUUGAGAc l=18 a=1 

mb-01111
ax-1011011
ku-01
ss-101110011110
fn-101
